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Script to run NumForce in parallel
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Topic: Script to run NumForce in parallel (Read 327 times)
sv
Newbie
Posts: 6
Script to run NumForce in parallel
«
on:
March 08, 2010, 04:59:41 PM »
Hi, I am trying to do NumForce calculations in parallel for one of the optimized excited state at RICC2/TZVP level of theory.
Here is the script I used to run the job using single node/single processor.
Serial Job
===============================
#PBS -l walltime=336:00:00
#PBS -l nodes=1:ppn=1
#PBS -N ExFreq
#PBS -S /bin/ksh
#PBS -j oe
cp $HOME/excited/freq/* $TMPDIR
cd $TMPDIR
module load turbomole-6.0.0
NumForce -level cc2 -central > force.out
cp -rf * $HOME/excited/freq/
exit
===============================
But the job did not complete in 336 hours. So I read online, that I can run this job in parallel.
Here is the script I used, but it did not run currectly,
Parallel script
===============================
#PBS -l walltime=336:00:00
#PBS -l nodes=2:ppn=4
#PBS -N ExFreqPara
#PBS -S /bin/ksh
#PBS -j oe
cp $HOME/excited/freq/para/* $TMPDIR
cd $TMPDIR
module load turbomole-parallel-6.0.0
NumForce -level cc2 -central > force.out
cp -rf * $HOME/excited/freq/para/
exit
===============================
Would you please let me know if I need to load some MPI library or add a flag such as "-np 8" with NumForce?
Thanks.
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Arnim
Developers
Full Member
Posts: 79
Re: Script to run NumForce in parallel
«
Reply #1 on:
March 11, 2010, 08:30:29 PM »
Hi,
NumForce runs a series of analytical gradient calculation in order to derive the Hessian numerically. Hence, a trivial
parallelization is possible. This is much easier and more efficient then using MPI binaries for each step.
Pease use the '-mfile' option to speed up the calculation.
Cheers,
Arnim
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